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1

Virus-Induced Gene Silencing Offers a Functional Genomics Platform for Studying Plant Cell Wall Formation

Zhu, Xiaohong, Pattathil, Sivakumar, Mazumder, Koushik, Brehm, Amanda, Hahn, Michael G., Dinesh-Kumar, S.P., Joshi, Chandrashekhar P.

Journal:

Molecular Plant

Year:

2010

Language:

english

File:

PDF, 4.11 MB

english, 2010

2

Biological conversion assay usingClostridium phytofermentansto estimate plant feedstock quality

Scott J Lee, Thomas A Warnick, Sivakumar Pattathil, Jesús G Alvelo-Maurosa, Michelle J Serapiglia, Heather McCormick, Virginia Brown, Naomi F Young, Danny J Schnell, Lawrence B Smart, Michael G Hahn,

Journal:

Biotechnology for Biofuels

Year:

2012

Language:

english

File:

PDF, 740 KB

english, 2012

3

Scavenging of reactive oxygen species in NaCl-stressed rice (Oryza sativa L.)—differential response in salt-tolerant and sensitive varieties

Hema Vaidyanathan, Pattathil Sivakumar, Romit Chakrabarty, George Thomas

Journal:

Year:

2003

Language:

english

File:

PDF, 139 KB

english, 2003

4

Protocols to Evaluate the Nutritional and Potential Health Benefits of Edible Mushrooms.

Balan, Venkatesh, Munafo, John P., Pattathil, Sivakumar, Merritt, Brian B., Venketachalam, Sivasankari, Ng, Wing-On

Journal:

Current Biotechnology

Year:

2018

Language:

english

File:

PDF, 2.27 MB

english, 2018

5

Desirable plant cell wall traits for higher-quality miscanthus lignocellulosic biomass

da Costa, Ricardo M. F., Pattathil, Sivakumar, Avci, Utku, Winters, Ana, Hahn, Michael G., Bosch, Maurice

Journal:

Biotechnology for Biofuels

Year:

2019

File:

PDF, 6.31 MB

2019

6

S -nitrosoglutathione promotes cell wall remodelling, alters the transcriptional profile and induces root hair formation in the hairless root hair defective 6 ( rhd6 ) mutant of Arabidopsis thaliana

Moro, Camila Fernandes, Gaspar, Marilia, da Silva, Felipe Rodrigues, Pattathil, Sivakumar, Hahn, Michael G., Salgado, Ione, Braga, Marcia Regina

Journal:

New Phytologist

Year:

2016

Language:

english

File:

PDF, 2.85 MB

english, 2016

7

Alkaline Peroxide Delignification of Corn Stover

Mittal, Ashutosh, Katahira, Rui, Donohoe, Bryon S, Black, Brenna A., Pattathil, Sivakumar, Stringer, Jack M., Beckham, Gregg T

Journal:

ACS Sustainable Chemistry & Engineering

Year:

2017

Language:

english

File:

PDF, 2.18 MB

english, 2017

8

An Arabidopsis Cell Wall Proteoglycan Consists of Pectin and Arabinoxylan Covalently Linked to an Arabinogalactan Protein

Tan, Li, Eberhard, Stefan, Pattathil, Sivakumar, Warder, Clayton, Glushka, John, Yuan, Chunhua, Hao, Zhangying, Zhu, Xiang, Avci, Utku, Miller, Jeffrey S., Baldwin, David, Pham, Charles, Orlando, Rona

Journal:

Year:

2013

Language:

english

File:

PDF, 1.13 MB

english, 2013

9

Desirable plant cell wall traits for higher-quality miscanthus lignocellulosic biomass

da Costa, Ricardo M. F., Pattathil, Sivakumar, Avci, Utku, Winters, Ana, Hahn, Michael G., Bosch, Maurice

Journal:

Biotechnology for Biofuels

Year:

2019

Language:

english

File:

PDF, 6.31 MB

english, 2019

10

Downregulation of GAUT12 in Populus deltoides by RNA silencing results in reduced recalcitrance, increased growth and reduced xylan and pectin in a woody biofuel feedstock

Biswal, Ajaya K, Hao, Zhangying, Pattathil, Sivakumar, Yang, Xiaohan, Winkeler, Kim, Collins, Cassandra, Mohanty, Sushree S, Richardson, Elizabeth A, Gelineo-Albersheim, Ivana, Hunt, Kimberly, Ryno, D

Journal:

Biotechnology for Biofuels

Year:

2015

Language:

english

File:

PDF, 4.39 MB

english, 2015

11

Comparative transcriptomics indicate changes in cell wall organization and stress response in seedlings during spaceflight

Johnson, Christina M., Subramanian, Aswati, Pattathil, Sivakumar, Correll, Melanie J., Kiss, John Z.

Journal:

American Journal of Botany

Year:

2017

Language:

english

File:

PDF, 1.87 MB

english, 2017

12

A Comprehensive Toolkit of Plant Cell Wall Glycan-Directed Monoclonal Antibodies

Sivakumar Pattathil, Utku Avci, David Baldwin, Alton G. Swennes, Janelle A. McGill, Zoë Popper, Tracey Bootten, Anathea Albert, Ruth H. Davis, Chakravarthy Chennareddy, Ruihua Dong, Beth O'Shea, Ray R

Journal:

PLANT PHYSIOLOGY

Year:

2010

Language:

english

File:

PDF, 3.24 MB

english, 2010

13

Engineered Lignin in Poplar Biomass Facilitates Cu-Catalyzed Alkaline-Oxidative Pretreatment

Bhalla, Aditya, Bansal, Namita, Pattathil, Sivakumar, Li, Muyang, Shen, Wei, Particka, Chrislyn, Karlen, Steven D, Phongpreecha, Thanaphong, Semaan, Rachel R., Gonzales-Vigil, Eliana, Ralph, John, Man

Journal:

ACS Sustainable Chemistry & Engineering

Year:

2018

Language:

english

File:

PDF, 1.49 MB

english, 2018

14

A two-phase model for the non-processive biosynthesis of homogalacturonan polysaccharides by the GAUT1:GAUT7 complex

Amos, Robert A, Pattathil, Sivakumar, Yang, Jeong-Yeh, Atmodjo, Melani A, Urbanowicz, Breeanna R., Moremen, Kelley W., Mohnen, Debra

Journal:

Journal of Biological Chemistry

Year:

2018

Language:

english

File:

PDF, 1.69 MB

english, 2018

15

Arabidopsis thaliana T-DNA Mutants Implicate GAUT Genes in the Biosynthesis of Pectin and Xylan in Cell Walls and Seed Testa

Caffall, Kerry H., Pattathil, Sivakumar, Phillips, Sarah E., Hahn, Michael G., Mohnen, Debra

Journal:

Molecular Plant

Year:

2009

Language:

english

File:

PDF, 533 KB

english, 2009

16

Immunolocalization of cell wall carbohydrate epitopes in seaweeds: presence of land plant epitopes inFucus vesiculosusL. (Phaeophyceae)

Raimundo, Sandra Cristina, Avci, Utku, Hopper, Christina, Pattathil, Sivakumar, Hahn, Michael G., Popper, Zoë A.

Journal:

Year:

2016

Language:

english

File:

PDF, 7.00 MB

english, 2016

17

An Arabidopsis Cell Wall Proteoglycan Consists of Pectin and Arabinoxylan Covalently Linked to an Arabinogalactan Protein

Li Tan, Stefan Eberhard, Sivakumar Pattathil, Clayton Warder, John Glushka, Chunhua Yuan, Zhangying Hao, Xiang Zhu, Utku Avci, Jeffrey S. Miller, David Baldwin, Charles Pham, Ronald Orlando, Alan Darv

Journal:

Year:

2013

Language:

english

File:

PDF, 3.43 MB

english, 2013

18

Activation of miR165b represses AtHB15 expression and induces pith secondary wall development in Arabidopsis

Du, Qian, Avci, Utku, Li, Shengben, Gallego-Giraldo, Lina, Pattathil, Sivakumar, Qi, Liying, Hahn, Michael G., Wang, Huanzhong

Journal:

The Plant Journal

Year:

2015

Language:

english

File:

PDF, 2.04 MB

english, 2015

19

Virus-induced gene silencing (VIGS)-mediated functional characterization of two genes involved in lignocellulosic secondary cell wall formation

Pandey, Shashank K., Nookaraju, Akula, Fujino, Takeshi, Pattathil, Sivakumar, Joshi, Chandrashekhar P.

Journal:

Plant Cell Reports

Year:

2016

Language:

english

File:

PDF, 5.35 MB

english, 2016

20

Effects of Extractive Ammonia Pretreatment on the Ultrastructure and Glycan Composition of Corn Stover

Avci, Utku, Zhou, Xuelian, Pattathil, Sivakumar, da Costa Sousa, Leonardo, Hahn, Michael G., Dale, Bruce, Xu, Yong, Balan, Venkatesh

Journal:

Frontiers in Energy Research

Year:

2019

File:

PDF, 2.31 MB

2019

21

Composition and Structure of Sugarcane Cell Wall Polysaccharides: Implications for Second-Generation Bioethanol Production

Souza, Amanda P., Leite, DÃ©bora C. C., Pattathil, Sivakumar, Hahn, Michael G., Buckeridge, Marcos S.

Journal:

BioEnergy Research

Year:

2013

Language:

english

File:

PDF, 1.75 MB

english, 2013

22

Changes in Cell Wall Carbohydrate Extractability Are Correlated with Reduced Recalcitrance of HCT Downregulated Alfalfa Biomass

Pattathil, Sivakumar, Saffold, Trina, Gallego-Giraldo, Lina, O'Neill, Malcolm, York, William S., Dixon, Richard A., Hahn, Michael G.

Journal:

Industrial Biotechnology

Year:

2012

Language:

english

File:

PDF, 397 KB

english, 2012

23

Galactose-Depleted Xyloglucan Is Dysfunctional and Leads to Dwarfism in Arabidopsis

Kong, Yingzhen, Peña, Maria J., Renna, Luciana, Avci, Utku, Pattathil, Sivakumar, Tuomivaara, Sami T., Li, Xuemei, Reiter, Wolf-Dieter, Brandizzi, Federica, Hahn, Michael G., Darvill, Alan G., York, W

Journal:

PLANT PHYSIOLOGY

Year:

2015

Language:

english

File:

PDF, 3.06 MB

english, 2015

24

Mutations in Multiple XXT Genes of Arabidopsis Reveal the Complexity of Xyloglucan Biosynthesis

Olga A. Zabotina, Utku Avci, David Cavalier, Sivakumar Pattathil, Yi-Hsiang Chou, Stefan Eberhard, Linda Danhof, Kenneth Keegstra and Michael G. Hahn

Journal:

PLANT PHYSIOLOGY

Year:

2012

Language:

english

File:

PDF, 5.38 MB

english, 2012

25

Biological lignocellulose solubilization: comparative evaluation of biocatalysts and enhancement via cotreatment

Paye, Julie M. D., Guseva, Anna, Hammer, Sarah K., Gjersing, Erica, Davis, Mark F., Davison, Brian H., Olstad, Jessica, Donohoe, Bryon S., Nguyen, Thanh Yen, Wyman, Charles E., Pattathil, Sivakumar, H

Journal:

Biotechnology for Biofuels

Year:

2016

Language:

english

File:

PDF, 2.18 MB

english, 2016

26

A cell wall reference profile for Miscanthus bioenergy crops highlights compositional and structural variations associated with development and organ origin

da Costa, Ricardo M. F., Pattathil, Sivakumar, Avci, Utku, Lee, Scott J., Hazen, Samuel P., Winters, Ana, Hahn, Michael G., Bosch, Maurice

Journal:

New Phytologist

Year:

2017

Language:

english

File:

PDF, 3.05 MB

english, 2017

27

Comparative evaluation of Populus variants total sugar release and structural features following pretreatment and digestion by two distinct biological systems

Thomas, Vanessa A., Kothari, Ninad, Bhagia, Samarthya, Akinosho, Hannah, Li, Mi, Pu, Yunqiao, Yoo, Chang Geun, Pattathil, Sivakumar, Hahn, Michael G., Raguaskas, Arthur J., Wyman, Charles E., Kumar, R

Journal:

Biotechnology for Biofuels

Year:

2017

Language:

english

File:

PDF, 2.61 MB

english, 2017

28

Determination of glycoside hydrolase specificities during hydrolysis of plant cell walls using glycome profiling

Walker, Johnnie A., Pattathil, Sivakumar, Bergeman, Lai F., Beebe, Emily T., Deng, Kai, Mirzai, Maryam, Northen, Trent R., Hahn, Michael G., Fox, Brian G.

Journal:

Biotechnology for Biofuels

Year:

2017

Language:

english

File:

PDF, 4.62 MB

english, 2017

29

Combining loss of function of FOLYLPOLYGLUTAMATE SYNTHETASE1 and CAFFEOYL-COA 3-O-METHYLTRANSFERASE1 for lignin reduction and improved saccharification efficiency in Arabidopsis thaliana

Xie, Hongli, Engle, Nancy L., Venketachalam, Sivasankari, Yoo, Chang Geun, Barros, Jaime, Lecoultre, Mitch, Howard, Nikki, Li, Guifen, Sun, Liang, Srivastava, Avinash C., Pattathil, Sivakumar, Pu, Yun

Journal:

Biotechnology for Biofuels

Year:

2019

File:

PDF, 4.34 MB

2019

30

Assessment of Genetic Variability of Cell Wall Degradability for the Selection of Alfalfa with Improved Saccharification Efficiency

Marc-Olivier Duceppe, Annick Bertrand, Sivakumar Pattathil, Jeffrey Miller, Yves Castonguay, Michael G. Hahn, Réal Michaud, Marie-Pier Dubé

Journal:

BioEnergy Research

Year:

2012

Language:

english

File:

PDF, 448 KB

english, 2012

31

Comparative analysis of the ability ofClostridium clariflavumstrains andClostridium thermocellumto utilize hemicellulose and unpretreated plant material

Izquierdo, Javier A, Pattathil, Sivakumar, Guseva, Anna, Hahn, Michael G, Lynd, Lee R

Journal:

Biotechnology for Biofuels

Year:

2014

Language:

english

File:

PDF, 1.81 MB

english, 2014

32

Insights into plant cell wall structure, architecture, and integrity using glycome profiling of native and AFEX TM -pre-treated biomass

Pattathil, Sivakumar, Hahn, Michael G., Dale, Bruce E., Chundawat, Shishir P. S.

Journal:

Journal of Experimental Botany

Year:

2015

Language:

english

File:

PDF, 5.02 MB

english, 2015

33

Impact of engineered lignin composition on biomass recalcitrance and ionic liquid pretreatment efficiency

Shi, Jian, Pattathil, Sivakumar, Ramakrishnan, Parthasarathi, Anderson, Nick, Kim, Jeong Im, Venkatachalam, Sivasankari, Hahn, Michael G, Chapple, Clint, Simmons, Blake, Singh, Seema

Journal:

Green Chemistry

Year:

2016

Language:

english

File:

PDF, 1.95 MB

english, 2016

34

The elaborate route for UDP-arabinose delivery into the Golgi of plants

Rautengarten, Carsten, Birdseye, Devon, Pattathil, Sivakumar, McFarlane, Heather E., Saez-Aguayo, Susana, Orellana, Ariel, Persson, Staffan, Hahn, Michael G., Scheller, Henrik V., Heazlewood, Joshua L

Journal:

Proceedings of the National Academy of Sciences

Year:

2017

Language:

english

File:

PDF, 1.17 MB

english, 2017

35

Dynamic changes in transcriptome and cell wall composition underlying brassinosteroid-mediated lignification of switchgrass suspension cells

Rao, Xiaolan, Shen, Hui, Pattathil, Sivakumar, Hahn, Michael G., Gelineo-Albersheim, Ivana, Mohnen, Debra, Pu, Yunqiao, Ragauskas, Arthur J., Chen, Xin, Chen, Fang, Dixon, Richard A.

Journal:

Biotechnology for Biofuels

Year:

2017

Language:

english

File:

PDF, 1.59 MB

english, 2017

36

Compensatory Guaiacyl Lignin Biosynthesis at the Expense of Syringyl Lignin in 4CL1 -Knockout Poplar

Tsai, Chung-Jui, Xu, Peng, Xue, Liang-Jiao, Hu, Hao, Nyamdari, Batbayar, Naran, Radnaa, Zhou, Xiaohong, Goeminne, Geert, Gao, Ruili, Gjersing, Erica, Dahlen, Joseph, Pattathil, Sivakumar, Hahn, Michae

Journal:

PLANT PHYSIOLOGY

Year:

2020

File:

PDF, 5.06 MB

2020

37

Coupling alkaline pre-extraction with alkaline-oxidative post-treatment of corn stover to enhance enzymatic hydrolysis and fermentability

Liu, Tongjun, Williams, Daniel L, Pattathil, Sivakumar, Li, Muyang, Hahn, Michael G, Hodge, David B

Journal:

Biotechnology for Biofuels

Year:

2014

Language:

english

File:

PDF, 828 KB

english, 2014

38

Carbohydrate and lignin are simultaneously solubilized from unpretreated switchgrass by microbial action at high temperature

Kataeva, Irina, Foston, Marcus B., Yang, Sung-Jae, Pattathil, Sivakumar, Biswal, Ajaya K., Poole II, Farris L., Basen, Mirko, Rhaesa, Amanda M., Thomas, Tina P., Azadi, Parastoo, Olman, Victor, Saffol

Journal:

Energy & Environmental Science

Year:

2013

Language:

english

File:

PDF, 588 KB

english, 2013

39

Deletion of a gene cluster encoding pectin degrading enzymes inCaldicellulosiruptor besciireveals an important role for pectin in plant biomass recalcitrance

Chung, Daehwan, Pattathil, Sivakumar, Biswal, Ajaya K, Hahn, Michael G, Mohnen, Debra, Westpheling, Janet

Journal:

Biotechnology for Biofuels

Year:

2014

Language:

english

File:

PDF, 1.48 MB

english, 2014

40

Comparison of Arabinoxylan Structure in Bioenergy and Model Grasses

Kulkarni, Ameya R., Pattathil, Sivakumar, Hahn, Michael G., York, William S., O'Neill, Malcolm A.

Journal:

Industrial Biotechnology

Year:

2012

Language:

english

File:

PDF, 689 KB

english, 2012

41

Investigating plant cell wall components that affect biomass recalcitrance in poplar and switchgrass

DeMartini, Jaclyn D., Pattathil, Sivakumar, Miller, Jeffrey S., Li, Hongjia, Hahn, Michael G., Wyman, Charles E.

Journal:

Energy & Environmental Science

Year:

2013

Language:

english

File:

PDF, 1.75 MB

english, 2013

42

Agave proves to be a low recalcitrant lignocellulosic feedstock for biofuels production on semi-arid lands

Li, Hongjia, Pattathil, Sivakumar, Foston, Marcus B, Ding, Shi-You, Kumar, Rajeev, Gao, Xiadi, Mittal, Ashutosh, Yarbrough, John M, Himmel, Michael E, Ragauskas, Arthur J, Hahn, Michael G, Wyman, Char

Journal:

Biotechnology for Biofuels

Year:

2014

Language:

english

File:

PDF, 1.83 MB

english, 2014

43

Ammonia Pretreatment of Corn Stover Enables Facile Lignin Extraction

Mittal, Ashutosh, Katahira, Rui, Donohoe, Bryon S., Pattathil, Sivakumar, Kandemkavil, Sindhu, Reed, Michelle L., Biddy, Mary J., Beckham, Gregg T.

Journal:

ACS Sustainable Chemistry & Engineering

Year:

2017

Language:

english

File:

PDF, 6.02 MB

english, 2017

44

Camphoric Carbon-Grafted Ni/NiO Nanowire Electrodes for High-Performance Energy-Storage Systems

Paravannoor, Anjali, Nair, Appukuttan S., Ranjusha, Rajagopal, Praveen, Pattathil, Subramanian, Kavassery R. V., Sivakumar, Nagarajan, Nair, Shantikumar V., Balakrishnan, Avinash

Journal:

Year:

2013

Language:

english

File:

PDF, 1.24 MB

english, 2013

45

Xylan hydrolysis in Populus trichocarpa×P. deltoides and model substrates during hydrothermal pretreatment

Trajano, Heather L., Pattathil, Sivakumar, Tomkins, Bruce A., Tschaplinski, Timothy J., Hahn, Michael G., Van Berkel, Gary J., Wyman, Charles E.

Journal:

Bioresource Technology

Year:

2015

Language:

english

File:

PDF, 781 KB

english, 2015

46

ARABIDOPSIS DEHISCENCE ZONE POLYGALACTURONASE 1 (ADPG1) releases latent defense signals in stems with reduced lignin content

Gallego-Giraldo, Lina, Liu, Chang, Pose-Albacete, Sara, Pattathil, Sivakumar, Peralta, Angelo Gabriel, Young, Jenna, Westpheling, Jan, Hahn, Michael G., Rao, Xiaolan, Knox, J. Paul, De Meester, Barbar

Journal:

Proceedings of the National Academy of Sciences

Year:

2020

File:

PDF, 1.60 MB

2020

47

Cell Wall Composition and Candidate Biosynthesis Gene Expression Across Rice Development

Lin, Fan, Manisseri, Chithra, Fagerström, Alexandra, Peck, Matthew L., Vega-Sánchez, Miguel E., Williams, Brian, Chiniquy, Dawn M., Saha, Prasenjit, Pattathil, Sivakumar, Conlin, Brian, Zhu, Lan, Hahn

Journal:

Plant and Cell Physiology

Year:

2016

Language:

english

File:

PDF, 1.32 MB

english, 2016

48

Elicitors and defense gene induction in plants with altered lignin compositions

Gallego-Giraldo, Lina, Posé, Sara, Pattathil, Sivakumar, Peralta, Angelo Gabriel, Hahn, Michael G., Ayre, Brian G., Sunuwar, Janak, Hernandez, Jonathan, Patel, Monika, Shah, Jyoti, Rao, Xiaolan, Knox,

Journal:

New Phytologist

Year:

2018

Language:

english

File:

PDF, 1.89 MB

english, 2018

49

Cell Wall Ultrastructure of Stem Wood, Roots, and Needles of a Conifer Varies in Response to Moisture Availability

Pattathil, Sivakumar, Ingwers, Miles W., Victoriano, Olivia L., Kandemkavil, Sindhu, McGuire, Mary Anne, Teskey, Robert O., Aubrey, Doug P.

Journal:

Frontiers in Plant Science

Year:

2016

Language:

english

File:

PDF, 3.61 MB

english, 2016

50

Biosynthesis of UDP-xylose: characterization of membrane-bound AtUxs2

Sivakumar Pattathil, April D. Harper, Maor Bar-Peled

Journal:

Year:

2005

Language:

english

File:

PDF, 567 KB

english, 2005

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